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Conformers: ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Results of the assignment of 280 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0011a4t-m10_A_G4_C5AAAAA00550.32 AA00
0021a4t-m11_A_G4_C5AAAAA00700.29 AA00
0031a4t-m12_A_G4_C5AAAAA00600.31 AA00
0041a4t-m13_A_G4_C5AAAAA00350.34 AA00
0051a4t-m14_A_G4_C5AAAAA00470.32 AA00
0061a4t-m15_A_G4_C5AAAAA00540.33 AA00
0071a4t-m16_A_G4_C5AAAAA00130.36 AA00
0081a4t-m17_A_G4_C5AAAAA00530.32 AA00
0091a4t-m18_A_G4_C5NANNANT00.78 AB02
0101a4t-m19_A_G4_C5AAAAA00830.26 AA00
0111a4t-m1_A_G4_C5AAAAA00650.29 AA00
0121a4t-m20_A_G4_C5AAAAA00400.35 AA00
0131a4t-m2_A_G4_C5AAAAA04470.39 AA04
0141a4t-m3_A_G4_C5AAAAA00690.29 AA00
0151a4t-m4_A_G4_C5AAAAA00610.31 AA00
0161a4t-m5_A_G4_C5AAAAA00350.35 AA00
0171a4t-m6_A_G4_C5AAAAA00420.34 AA00
0181a4t-m7_A_G4_C5AAAAA00450.34 AA00
0191a4t-m8_A_G4_C5AAAAA00430.32 AA00
0201a4t-m9_A_G4_C5AAAAA00580.30 AA00
0211a4t-m10_A_C5_G6AAwAA01870.16 AA01
0221a4t-m11_A_C5_G6AAwAA01850.16 AA01
0231a4t-m12_A_C5_G6AAwAA01850.15 AA01
0241a4t-m13_A_C5_G6AAwAA01850.17 AA01
0251a4t-m14_A_C5_G6AAwAA01840.17 AA01
0261a4t-m15_A_C5_G6AAwAA01880.15 AA01
0271a4t-m16_A_C5_G6AAwAA01840.19 AA01
0281a4t-m17_A_C5_G6AAwAA01790.16 AA01
0291a4t-m18_A_C5_G6AAwAA01860.20 AA01
0301a4t-m19_A_C5_G6AAwAA01300.28 AA01
0311a4t-m1_A_C5_G6AAwAA01560.20 AA01
0321a4t-m20_A_C5_G6AAwAA01850.18 AA01
0331a4t-m2_A_C5_G6AAwAA01800.19 AA01
0341a4t-m3_A_C5_G6AAwAA01790.18 AA01
0351a4t-m4_A_C5_G6AAwAA01770.19 AA01
0361a4t-m5_A_C5_G6AAwAA01870.16 AA01
0371a4t-m6_A_C5_G6AAwAA01850.18 AA01
0381a4t-m7_A_C5_G6AAwAA01850.18 AA01
0391a4t-m8_A_C5_G6AAwAA01790.16 AA01
0401a4t-m9_A_C5_G6AAwAA01880.15 AA01
0411a4t-m10_A_G6_C7AAAAA00550.42 AA00
0421a4t-m11_A_G6_C7AAAAA00570.39 AA00
0431a4t-m12_A_G6_C7AAAAA00640.39 AA00
0441a4t-m13_A_G6_C7AAAAA00590.41 AA00
0451a4t-m14_A_G6_C7AAAAA00520.43 AA00
0461a4t-m15_A_G6_C7AAAAA00620.39 AA00
0471a4t-m16_A_G6_C7AAAAA00400.45 AA00
0481a4t-m17_A_G6_C7AAAAA00480.46 AA00
0491a4t-m18_A_G6_C7AAAAA00550.40 AA00
0501a4t-m19_A_G6_C7AAAAA00400.48 AA00
0511a4t-m1_A_G6_C7AAAAA00270.54 AA00
0521a4t-m20_A_G6_C7AAAAA00460.42 AA00
0531a4t-m2_A_G6_C7AAAAA00430.44 AA00
0541a4t-m3_A_G6_C7AAAAA00500.46 AA00
0551a4t-m4_A_G6_C7AAAAA00540.42 AA00
0561a4t-m5_A_G6_C7AAAAA00510.44 AA00
0571a4t-m6_A_G6_C7AAAAA00540.41 AA00
0581a4t-m7_A_G6_C7AAAAA00480.43 AA00
0591a4t-m8_A_G6_C7AAAAA00570.43 AA00
0601a4t-m9_A_G6_C7AAAAA00510.45 AA00
0611a4t-m10_A_C7_U8AAAAA00710.30 AA00
0621a4t-m11_A_C7_U8AAAAA00730.28 AA00
0631a4t-m12_A_C7_U8AAAAA00720.30 AA00
0641a4t-m13_A_C7_U8AAAAA00710.30 AA00
0651a4t-m14_A_C7_U8AAwAA01570.34 AA01
0661a4t-m15_A_C7_U8AAAAA00710.30 AA00
0671a4t-m16_A_C7_U8AAAAA00750.29 AA00
0681a4t-m17_A_C7_U8AAAAA00740.31 AA00
0691a4t-m18_A_C7_U8AAwAA01680.34 AA01
0701a4t-m19_A_C7_U8NANNANT00.38 AA01
0711a4t-m1_A_C7_U8NANNANT01.35 OP24
0721a4t-m20_A_C7_U8AAwAA01710.33 AA01
0731a4t-m2_A_C7_U8AAwAA01650.35 AA01
0741a4t-m3_A_C7_U8AAwAA01590.36 AA01
0751a4t-m4_A_C7_U8NANNANT01.36 OP24
0761a4t-m5_A_C7_U8NANNANT01.39 OP24
0771a4t-m6_A_C7_U8AAAAA00750.29 AA00
0781a4t-m7_A_C7_U8AAAAA00720.30 AA00
0791a4t-m8_A_C7_U8AAAAA00790.29 AA00
0801a4t-m9_A_C7_U8AAwAA01630.35 AA01
0811a4t-m10_A_U8_G9AAAAA00600.42 AA00
0821a4t-m11_A_U8_G9AAAAA00720.36 AA00
0831a4t-m12_A_U8_G9AAAAA00470.47 AA00
0841a4t-m13_A_U8_G9AAAAA00350.47 AA00
0851a4t-m14_A_U8_G9AAAAA00330.58 AA00
0861a4t-m15_A_U8_G9AAAAA00450.46 AA00
0871a4t-m16_A_U8_G9AAAAA00550.44 AA00
0881a4t-m17_A_U8_G9AAAAA00500.46 AA00
0891a4t-m18_A_U8_G9AAAAA00250.59 AA00
0901a4t-m19_A_U8_G9AAAAA00390.53 AA00
0911a4t-m1_A_U8_G9AAAAA00410.53 AA00
0921a4t-m20_A_U8_G9AAAAA00280.59 AA00
0931a4t-m2_A_U8_G9AAAAA00380.56 AA00
0941a4t-m3_A_U8_G9NANNANT00.80 AA04
0951a4t-m4_A_U8_G9AAAAA00410.53 AA00
0961a4t-m5_A_U8_G9NANNANT00.77 AA04
0971a4t-m6_A_U8_G9AAAAA00610.42 AA00
0981a4t-m7_A_U8_G9AAAAA00430.45 AA00
0991a4t-m8_A_U8_G9AAAAA00510.45 AA00
1001a4t-m9_A_U8_G9AAAAA00330.58 AA00
1011a4t-m10_A_G9_A10NANNANT01.18 OP09
1021a4t-m11_A_G9_A10NANNANT01.75 OP28
1031a4t-m12_A_G9_A10NANNANT01.55 AA07
1041a4t-m13_A_G9_A10NANNANT00.62 OP04
1051a4t-m14_A_G9_A10NANNANT00.60 OP04
1061a4t-m15_A_G9_A10NANNANT00.83 OP25
1071a4t-m16_A_G9_A10NANNANT01.57 AA07
1081a4t-m17_A_G9_A10NANNANT01.24 OP09
1091a4t-m18_A_G9_A10NANNANT01.28 OP09
1101a4t-m19_A_G9_A10NANNANT00.82 OP25
1111a4t-m1_A_G9_A10NANNANT01.25 OP09
1121a4t-m20_A_G9_A10NANNANT00.57 OP04
1131a4t-m2_A_G9_A10NANNANT01.88 OP28
1141a4t-m3_A_G9_A10NANNANT00.61 OP04
1151a4t-m4_A_G9_A10NANNANT01.25 OP09
1161a4t-m5_A_G9_A10NANNANT00.97 OP09
1171a4t-m6_A_G9_A10NANNANT00.63 OP04
1181a4t-m7_A_G9_A10NANNANT00.61 OP04
1191a4t-m8_A_G9_A10NANNANT01.24 OP09
1201a4t-m9_A_G9_A10NANNANT01.24 OP09
1211a4t-m10_A_A10_C11NANNANT00.67 OP14
1221a4t-m11_A_A10_C11NANNANT00.48 OP14
1231a4t-m12_A_A10_C11NANNANT01.69 OP28
1241a4t-m13_A_A10_C11NANNANT01.71 OP02
1251a4t-m14_A_A10_C11NANNANT01.63 OP02
1261a4t-m15_A_A10_C11NANNANT00.51 OP14
1271a4t-m16_A_A10_C11NANNANT01.67 OP28
1281a4t-m17_A_A10_C11NANNANT01.57 OP02
1291a4t-m18_A_A10_C11NANNANT01.44 OP07
1301a4t-m19_A_A10_C11NANNANT00.68 OP14
1311a4t-m1_A_A10_C11NANNANT00.54 OP25
1321a4t-m20_A_A10_C11NANNANT01.63 OP02
1331a4t-m2_A_A10_C11NANNANT00.53 OP25
1341a4t-m3_A_A10_C11NANNANT01.66 OP02
1351a4t-m4_A_A10_C11NANNANT01.69 OP28
1361a4t-m5_A_A10_C11NANNANT00.61 OP14
1371a4t-m6_A_A10_C11NANNANT00.67 OP14
1381a4t-m7_A_A10_C11NANNANT01.69 OP02
1391a4t-m8_A_A10_C11NANNANT01.57 OP02
1401a4t-m9_A_A10_C11NANNANT01.61 OP02
1411a4t-m10_A_C11_A12NANNANT00.86 OP11
1421a4t-m11_A_C11_A12NANNANT00.84 OP11
1431a4t-m12_A_C11_A12NANNANT00.93 OP11
1441a4t-m13_A_C11_A12NANNANT01.34 OP17
1451a4t-m14_A_C11_A12NANNANT00.92 OP11
1461a4t-m15_A_C11_A12NANNANT01.00 OP11
1471a4t-m16_A_C11_A12NANNANT00.87 OP11
1481a4t-m17_A_C11_A12NANNANT01.10 OP17
1491a4t-m18_A_C11_A12NANNANT00.98 OP11
1501a4t-m19_A_C11_A12NANNANT01.01 OP11
1511a4t-m1_A_C11_A12NANNANT00.98 OP11
1521a4t-m20_A_C11_A12NANNANT00.93 OP11
1531a4t-m2_A_C11_A12NANNANT00.89 OP11
1541a4t-m3_A_C11_A12OPNOP11180.94 OP11
1551a4t-m4_A_C11_A12NANNANT00.96 OP11
1561a4t-m5_A_C11_A12OPNOP11220.79 OP11
1571a4t-m6_A_C11_A12NANNANT00.97 OP11
1581a4t-m7_A_C11_A12NANNANT01.69 OP16
1591a4t-m8_A_C11_A12NANNANT01.15 OP17
1601a4t-m9_A_C11_A12OPNOP1160.91 OP11
1611a4t-m10_A_A12_A13AAAAA00720.28 AA00
1621a4t-m11_A_A12_A13AAAAA00700.26 AA00
1631a4t-m12_A_A12_A13AAAAA00640.30 AA00
1641a4t-m13_A_A12_A13AAAAA08850.23 AA08
1651a4t-m14_A_A12_A13AAAAA00640.29 AA00
1661a4t-m15_A_A12_A13AAAAA00760.22 AA00
1671a4t-m16_A_A12_A13AAAAA00750.24 AA00
1681a4t-m17_A_A12_A13AAAAA00520.43 AA00
1691a4t-m18_A_A12_A13AAAAA08780.23 AA08
1701a4t-m19_A_A12_A13AAAAA00680.30 AA00
1711a4t-m1_A_A12_A13AAAAA00600.30 AA00
1721a4t-m20_A_A12_A13AAAAA00650.28 AA00
1731a4t-m2_A_A12_A13AAAAA00590.29 AA00
1741a4t-m3_A_A12_A13AAAAA00680.27 AA00
1751a4t-m4_A_A12_A13AAAAA08820.24 AA08
1761a4t-m5_A_A12_A13AAAAA00700.25 AA00
1771a4t-m6_A_A12_A13AAwAA01780.28 AA01
1781a4t-m7_A_A12_A13AAAAA08810.26 AA08
1791a4t-m8_A_A12_A13AAAAA08740.33 AA08
1801a4t-m9_A_A12_A13AAAAA08830.22 AA08
1811a4t-m10_A_A13_A14AAwAA05650.43 AA05
1821a4t-m11_A_A13_A14AAAAA00220.45 AA00
1831a4t-m12_A_A13_A14AAwAA05650.42 AA05
1841a4t-m13_A_A13_A14AAAAA08290.52 AA08
1851a4t-m14_A_A13_A14AAAAA00290.45 AA00
1861a4t-m15_A_A13_A14AAAAA00240.44 AA00
1871a4t-m16_A_A13_A14AAAAA00170.48 AA00
1881a4t-m17_A_A13_A14AAwAA01360.40 AA01
1891a4t-m18_A_A13_A14NANNANT00.50 AA00
1901a4t-m19_A_A13_A14AAwAA05640.43 AA05
1911a4t-m1_A_A13_A14AAAAA00190.47 AA00
1921a4t-m20_A_A13_A14AAAAA00190.46 AA00
1931a4t-m2_A_A13_A14AAAAA00200.46 AA00
1941a4t-m3_A_A13_A14AAAAA00190.48 AA00
1951a4t-m4_A_A13_A14AAAAA08450.45 AA08
1961a4t-m5_A_A13_A14AAAAA00290.42 AA00
1971a4t-m6_A_A13_A14AAAAA08290.53 AA08
1981a4t-m7_A_A13_A14AAAAA00110.49 AA00
1991a4t-m8_A_A13_A14NANNANT00.49 AA00
2001a4t-m9_A_A13_A14AAAAA00190.46 AA00
2011a4t-m10_A_A14_G15AAAAA08660.36 AA08
2021a4t-m11_A_A14_G15AAAAA00580.30 AA00
2031a4t-m12_A_A14_G15AAAAA08650.37 AA08
2041a4t-m13_A_A14_G15AAwAA01700.28 AA01
2051a4t-m14_A_A14_G15AAwAA01660.30 AA01
2061a4t-m15_A_A14_G15AAAAA00560.34 AA00
2071a4t-m16_A_A14_G15AAwAA01720.27 AA01
2081a4t-m17_A_A14_G15AAwAA01560.25 AA01
2091a4t-m18_A_A14_G15AAAAA00650.28 AA00
2101a4t-m19_A_A14_G15AAAAA08610.41 AA08
2111a4t-m1_A_A14_G15AAAAA00650.30 AA00
2121a4t-m20_A_A14_G15AAAAA00650.28 AA00
2131a4t-m2_A_A14_G15AAAAA00640.29 AA00
2141a4t-m3_A_A14_G15AAwAA01690.26 AA01
2151a4t-m4_A_A14_G15AAAAA00680.28 AA00
2161a4t-m5_A_A14_G15AAAAA00550.35 AA00
2171a4t-m6_A_A14_G15AAwAA01770.23 AA01
2181a4t-m7_A_A14_G15AAAAA00670.28 AA00
2191a4t-m8_A_A14_G15AAAAA00640.28 AA00
2201a4t-m9_A_A14_G15AAAAA00600.31 AA00
2211a4t-m10_A_G15_C16AAAAA00790.27 AA00
2221a4t-m11_A_G15_C16AAAAA00750.20 AA00
2231a4t-m12_A_G15_C16AAAAA00760.23 AA00
2241a4t-m13_A_G15_C16AAAAA00460.39 AA00
2251a4t-m14_A_G15_C16AAAAA00440.38 AA00
2261a4t-m15_A_G15_C16AAAAA00650.26 AA00
2271a4t-m16_A_G15_C16AAAAA00470.38 AA00
2281a4t-m17_A_G15_C16AAAAA08610.26 AA08
2291a4t-m18_A_G15_C16AAAAA00760.21 AA00
2301a4t-m19_A_G15_C16AAAAA00680.30 AA00
2311a4t-m1_A_G15_C16AAAAA00790.27 AA00
2321a4t-m20_A_G15_C16AAAAA00750.21 AA00
2331a4t-m2_A_G15_C16AAAAA00770.22 AA00
2341a4t-m3_A_G15_C16AAAAA08600.27 AA08
2351a4t-m4_A_G15_C16AAAAA00810.22 AA00
2361a4t-m5_A_G15_C16AAAAA00780.28 AA00
2371a4t-m6_A_G15_C16AAAAA00450.31 AA00
2381a4t-m7_A_G15_C16AAAAA00750.20 AA00
2391a4t-m8_A_G15_C16AAAAA00780.18 AA00
2401a4t-m9_A_G15_C16AAAAA00740.20 AA00
2411a4t-m10_A_C16_G17AAwAA01710.38 AA01
2421a4t-m11_A_C16_G17AAAAA00700.17 AA00
2431a4t-m12_A_C16_G17AAAAA00820.17 AA00
2441a4t-m13_A_C16_G17AAwAA01760.35 AA01
2451a4t-m14_A_C16_G17AAwAA01750.35 AA01
2461a4t-m15_A_C16_G17AAAAA00790.17 AA00
2471a4t-m16_A_C16_G17AAwAA01670.40 AA01
2481a4t-m17_A_C16_G17AAAAA00750.21 AA00
2491a4t-m18_A_C16_G17AAAAA08800.19 AA08
2501a4t-m19_A_C16_G17AAwAA01730.36 AA01
2511a4t-m1_A_C16_G17AAwAA01730.37 AA01
2521a4t-m20_A_C16_G17AAAAA00770.17 AA00
2531a4t-m2_A_C16_G17AAAAA00810.18 AA00
2541a4t-m3_A_C16_G17AAAAA00770.20 AA00
2551a4t-m4_A_C16_G17AAAAA00830.17 AA00
2561a4t-m5_A_C16_G17AAwAA01820.31 AA01
2571a4t-m6_A_C16_G17AAAAA00760.18 AA00
2581a4t-m7_A_C16_G17AAAAA00770.20 AA00
2591a4t-m8_A_C16_G17AAAAA00770.20 AA00
2601a4t-m9_A_C16_G17AAAAA00790.17 AA00
2611a4t-m10_A_G17_C18AAAAA00520.38 AA00
2621a4t-m11_A_G17_C18NANNANT00.49 AA04
2631a4t-m12_A_G17_C18AAAAA00900.21 AA00
2641a4t-m13_A_G17_C18AAAAA00580.37 AA00
2651a4t-m14_A_G17_C18AAAAA00580.36 AA00
2661a4t-m15_A_G17_C18AAAAA00840.25 AA00
2671a4t-m16_A_G17_C18AAAAA00530.37 AA00
2681a4t-m17_A_G17_C18AAAAA00850.24 AA00
2691a4t-m18_A_G17_C18AAAAA00850.25 AA00
2701a4t-m19_A_G17_C18AAAAA00490.36 AA00
2711a4t-m1_A_G17_C18AAAAA00540.36 AA00
2721a4t-m20_A_G17_C18AAAAA00850.24 AA00
2731a4t-m2_A_G17_C18AAAAA00880.22 AA00
2741a4t-m3_A_G17_C18AAAAA00860.22 AA00
2751a4t-m4_A_G17_C18AAAAA00880.22 AA00
2761a4t-m5_A_G17_C18AAAAA00600.35 AA00
2771a4t-m6_A_G17_C18AAAAA00840.24 AA00
2781a4t-m7_A_G17_C18AAAAA00830.25 AA00
2791a4t-m8_A_G17_C18AAAAA00840.24 AA00
2801a4t-m9_A_G17_C18AAAAA00860.24 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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