Conformers:
ABBIImiBZICOPNSYNN
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LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1a4d_A_G68_G69 | NAN | NANT | 0 | 0.60 |
| 02 | 1a4d_A_G69_C70 | AAA | AA08 | 56 | 0.28 |
| 03 | 1a4d_A_C70_C71 | AAA | AA00 | 69 | 0.21 |
| 04 | 1a4d_A_C71_G72 | AAA | AA08 | 42 | 0.47 |
| 05 | 1a4d_A_G72_A73 | OPN | OP08 | 22 | 0.40 |
| 06 | 1a4d_A_A73_U74 | NAN | NANT | 0 | 0.77 |
| 07 | 1a4d_A_U74_G75 | AAA | AA00 | 21 | 0.52 |
| 08 | 1a4d_A_G75_G76 | AAA | AA08 | 9 | 0.44 |
| 09 | 1a4d_A_G76_U77 | AAA | AA04 | 55 | 0.35 |
| 10 | 1a4d_A_U77_A78 | AAA | AA04 | 81 | 0.23 |
| 11 | 1a4d_A_A78_G79 | AAA | AA00 | 14 | 0.52 |
| 12 | 1a4d_A_G79_U80 | AAA | AA08 | 76 | 0.25 |
| 13 | 1a4d_A_U80_G81 | AAA | AA00 | 53 | 0.30 |
| 14 | 1a4d_A_G81_U82 | AAA | AA00 | 64 | 0.27 |
| 15 | 1a4d_A_U82_G83 | AAA | AA00 | 48 | 0.22 |
| 16 | 1a4d_A_G83_G84 | AAA | AA08 | 68 | 0.22 |
| 17 | 1a4d_A_G84_G85 | AAA | AA00 | 40 | 0.33 |
| 18 | 1a4d_A_G85_G86 | AAA | AA00 | 15 | 0.53 |
| 19 | 1a4d_A_G86_U87 | NAN | NANT | 0 | 0.56 |
| 20 | 1a4d_A_U87_C88 | NAN | NANT | 0 | 0.73 |
| 21 | 1a4d_B_U89_C90 | NAN | NANT | 0 | 1.04 |
| 22 | 1a4d_B_C90_C91 | AAA | AA00 | 34 | 0.32 |
| 23 | 1a4d_B_C91_C92 | AAA | AA00 | 53 | 0.23 |
| 24 | 1a4d_B_C92_C93 | AAA | AA08 | 72 | 0.33 |
| 25 | 1a4d_B_C93_A94 | AAA | AA08 | 79 | 0.24 |
| 26 | 1a4d_B_A94_U95 | AAA | AA00 | 81 | 0.21 |
| 27 | 1a4d_B_U95_G96 | AAA | AA00 | 39 | 0.37 |
| 28 | 1a4d_B_G96_C97 | AAA | AA08 | 70 | 0.25 |
| 29 | 1a4d_B_C97_G98 | NAN | NANT | 0 | 0.57 |
| 30 | 1a4d_B_G98_A99 | NAN | NANT | 0 | 0.27 |
| 31 | 1a4d_B_A99_G100 | NAN | NANT | 0 | 0.62 |
| 32 | 1a4d_B_G100_A101 | AAA | AA08 | 26 | 0.43 |
| 33 | 1a4d_B_A101_G102 | AAA | AA04 | 64 | 0.28 |
| 34 | 1a4d_B_G102_U103 | AAA | AA00 | 10 | 0.37 |
| 35 | 1a4d_B_U103_A104 | AAA | AA08 | 74 | 0.33 |
| 36 | 1a4d_B_A104_G105 | AAA | AA08 | 30 | 0.55 |
| 37 | 1a4d_B_G105_G106 | AAA | AA00 | 16 | 0.34 |
| 38 | 1a4d_B_G106_C107 | AAA | AA08 | 62 | 0.25 |
| 39 | 1a4d_B_C107_C108 | AAA | AA00 | 44 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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