Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HUMAN NF-KAPPA-B P52 BOUND TO DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1a3q_C_DG505_DG506 | BBB | BB00 | 87 | 0.19 |
| 02 | 1a3q_C_DG506_DG507 | B12 | BB04 | 71 | 0.18 |
| 03 | 1a3q_C_DG507_DG508 | B12 | BB04 | 69 | 0.40 |
| 04 | 1a3q_C_DG508_DA509 | B12 | BB04 | 74 | 0.17 |
| 05 | 1a3q_C_DA509_DA510 | BBB | BB00 | 94 | 0.13 |
| 06 | 1a3q_C_DA510_DT511 | BBB | BB01 | 65 | 0.21 |
| 07 | 1a3q_C_DT511_DC512 | BBB | BB01 | 71 | 0.22 |
| 08 | 1a3q_C_DC512_DC513 | BBB | BB00 | 57 | 0.29 |
| 09 | 1a3q_C_DC513_DC514 | BBB | BB00 | 36 | 0.19 |
| 10 | 1a3q_C_DC514_DC515 | B12 | BB04 | 58 | 0.36 |
| 11 | 1a3q_D_DG605_DG606 | BBB | BB00 | 49 | 0.23 |
| 12 | 1a3q_D_DG606_DG607 | B12 | BB04 | 89 | 0.19 |
| 13 | 1a3q_D_DG607_DG608 | BBB | BB00 | 67 | 0.24 |
| 14 | 1a3q_D_DG608_DA609 | B12 | BB04 | 41 | 0.20 |
| 15 | 1a3q_D_DA609_DT610 | BBB | BB00 | 91 | 0.23 |
| 16 | 1a3q_D_DT610_DT611 | BBB | BB00 | 81 | 0.22 |
| 17 | 1a3q_D_DT611_DC612 | BBB | BB00 | 81 | 0.28 |
| 18 | 1a3q_D_DC612_DC613 | B12 | BB04 | 23 | 0.30 |
| 19 | 1a3q_D_DC613_DC614 | B12 | BB04 | 63 | 0.40 |
| 20 | 1a3q_D_DC614_DC615 | BB2 | BB07 | 87 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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