Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1a34_B_A1_A2 | AAA | AA00 | 14 | 0.39 |
| 02 | 1a34_B_A2_A3 | AAA | AA00 | 48 | 0.28 |
| 03 | 1a34_B_A3_A4 | AAA | AA00 | 71 | 0.17 |
| 04 | 1a34_B_A4_A5 | AAA | AA00 | 63 | 0.23 |
| 05 | 1a34_B_A5_A6 | AAA | AA00 | 86 | 0.14 |
| 06 | 1a34_B_A6_A7 | AAA | AA00 | 72 | 0.25 |
| 07 | 1a34_B_A7_A8 | AAA | AA00 | 48 | 0.25 |
| 08 | 1a34_B_A8_A9 | AAA | AA03 | 20 | 0.36 |
| 09 | 1a34_B_A9_A10 | NAN | NANT | 0 | 0.66 |
| 10 | 1a34_C_U1_U2 | AAA | AA00 | 37 | 0.33 |
| 11 | 1a34_C_U2_U3 | AAA | AA00 | 49 | 0.32 |
| 12 | 1a34_C_U3_U4 | AAA | AA00 | 70 | 0.23 |
| 13 | 1a34_C_U4_U5 | AAA | AA08 | 85 | 0.16 |
| 14 | 1a34_C_U5_U6 | AAA | AA00 | 57 | 0.29 |
| 15 | 1a34_C_U6_U7 | AAA | AA00 | 69 | 0.20 |
| 16 | 1a34_C_U7_U8 | AAA | AA00 | 80 | 0.25 |
| 17 | 1a34_C_U8_U9 | AAA | AA00 | 11 | 0.43 |
| 18 | 1a34_C_U9_U10 | NAN | NANT | 0 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|