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Conformers: ABBIImiBZICOPNSYNN
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HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
011a31_C_DA1_DA2BBwBB02610.48 BB02
021a31_C_DA2_DA3BBBBB00460.40 BB00
031a31_C_DA3_DA4BBBBB00930.14 BB00
041a31_C_DA4_DA5BBBBB00830.14 BB00
051a31_C_DA5_DG6BBBBB01820.16 BB01
061a31_C_DG6_DA7BBBBB00740.18 BB00
071a31_C_DA7_DC8miBBB13520.28 BB13
081a31_C_DC8_5IU9A-BAB03550.43 AB03
091a31_C_DT11_DG12A-BAB01310.26 AB01
101a31_C_DG12_DA13BBBBB00280.35 BB00
111a31_C_DA13_DA14BB2BB07240.34 BB07
121a31_C_DA14_DA15B12BB04630.29 BB04
131a31_C_DA15_DA16BBBBB00760.16 BB00
141a31_C_DA16_DA17BBwBB02540.24 BB02
151a31_C_DA17_5IU18BBBBB00680.31 BB00
161a31_C_5IU18_5IU19B12BB04920.14 BB04
171a31_C_5IU19_5IU20BBBBB00320.39 BB00
181a31_C_5IU20_5IU21BBBBB00780.30 BB00
191a31_C_5IU21_DT22B12BB04730.33 BB04
201a31_D_DA101_DA102BBwBB02720.26 BB02
211a31_D_DA102_DA103BBBBB00770.21 BB00
221a31_D_DA103_DA104BBBBB00860.23 BB00
231a31_D_DA104_DA105BBwBB02580.22 BB02
241a31_D_DA105_DT106BBwBB02690.33 BB02
251a31_D_DT106_5IU107BBBBB00520.23 BB00
261a31_D_5IU107_5IU108BBBBB00640.28 BB00
271a31_D_5IU108_5IU109BBBBB00450.35 BB00
281a31_D_5IU109_5IU110BBBBB00840.25 BB00
291a31_D_5IU110_DC111BBBBB00880.16 BB00
301a31_D_DC111_DA112BBBBB00700.30 BB00
311a31_D_DA112_DA113BB2BB07910.25 BB07
321a31_D_DA113_DA114BBBBB00810.15 BB00
331a31_D_DA114_DG115B12BB05840.24 BB05
341a31_D_DG115_DT116BBwBB16500.59 BB16
351a31_D_DT116_DC117BBBBB00860.21 BB00
361a31_D_DC117_DT118BBBBB00800.33 BB00
371a31_D_DT118_DT119BBBBB00880.16 BB00
381a31_D_DT119_DT120BBBBB00860.21 BB00
391a31_D_DT120_DT121BBBBB00810.17 BB00
401a31_D_DT121_DT122BBBBB00730.22 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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