Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1a1j_B_DA1_DG2 | SYN | BBS1 | 16 | 0.44 |
| 02 | 1a1j_B_DG2_DC3 | BBB | BB00 | 76 | 0.33 |
| 03 | 1a1j_B_DC3_DG4 | BB2 | BB07 | 64 | 0.34 |
| 04 | 1a1j_B_DG4_DT5 | BBB | BB00 | 75 | 0.37 |
| 05 | 1a1j_B_DT5_DG6 | B12 | BB04 | 59 | 0.29 |
| 06 | 1a1j_B_DG6_DG7 | BBB | BB00 | 75 | 0.26 |
| 07 | 1a1j_B_DG7_DG8 | BBB | BB00 | 91 | 0.21 |
| 08 | 1a1j_B_DG8_DC9 | BBB | BB00 | 88 | 0.23 |
| 09 | 1a1j_B_DC9_DG10 | BB2 | BB07 | 84 | 0.21 |
| 10 | 1a1j_B_DG10_DT11 | BBB | BB00 | 71 | 0.32 |
| 11 | 1a1j_C_DT51_DA52 | BBB | BB00 | 63 | 0.39 |
| 12 | 1a1j_C_DA52_DC53 | BBB | BB00 | 65 | 0.35 |
| 13 | 1a1j_C_DC53_DG54 | BBB | BB00 | 92 | 0.16 |
| 14 | 1a1j_C_DG54_DC55 | BBw | BB02 | 55 | 0.40 |
| 15 | 1a1j_C_DC55_DC56 | BBB | BB00 | 85 | 0.22 |
| 16 | 1a1j_C_DC56_DC57 | BBB | BB00 | 81 | 0.27 |
| 17 | 1a1j_C_DC57_DA58 | BBB | BB00 | 79 | 0.24 |
| 18 | 1a1j_C_DA58_DC59 | BBB | BB00 | 69 | 0.28 |
| 19 | 1a1j_C_DC59_DG60 | BBB | BB00 | 85 | 0.20 |
| 20 | 1a1j_C_DG60_DC61 | BBB | BB00 | 78 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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