Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1a0a_C_DC1_DT2 | miB | BB10 | 53 | 0.43 |
| 02 | 1a0a_C_DT2_DC3 | NAN | NANT | 0 | 0.58 |
| 03 | 1a0a_C_DC3_DA4 | miB | BB10 | 10 | 0.49 |
| 04 | 1a0a_C_DA4_DC5 | NAN | NANT | 0 | 0.76 |
| 05 | 1a0a_C_DC5_DA6 | B12 | BB04 | 23 | 0.47 |
| 06 | 1a0a_C_DA6_DC7 | BBB | BB00 | 27 | 0.59 |
| 07 | 1a0a_C_DC7_DG8 | NAN | NANT | 0 | 0.51 |
| 08 | 1a0a_C_DG8_DT9 | NAN | NANT | 0 | 0.61 |
| 09 | 1a0a_C_DT9_DG10 | miB | BB10 | 56 | 0.56 |
| 10 | 1a0a_C_DG10_DG11 | NAN | NANT | 0 | 0.41 |
| 11 | 1a0a_C_DG11_DG12 | NAN | NANT | 0 | 0.68 |
| 12 | 1a0a_C_DG12_DA13 | NAN | NANT | 0 | 0.95 |
| 13 | 1a0a_C_DA13_DC14 | NAN | NANT | 0 | 0.52 |
| 14 | 1a0a_C_DC14_DT15 | NAN | NANT | 0 | 0.53 |
| 15 | 1a0a_C_DT15_DA16 | BBB | BB00 | 18 | 0.45 |
| 16 | 1a0a_C_DA16_DG17 | BBw | BB02 | 53 | 0.31 |
| 17 | 1a0a_D_DC1_DT2 | NAN | NANT | 0 | 0.52 |
| 18 | 1a0a_D_DT2_DA3 | BBB | BB00 | 53 | 0.30 |
| 19 | 1a0a_D_DA3_DG4 | BB2 | BB07 | 15 | 0.47 |
| 20 | 1a0a_D_DG4_DT5 | NAN | NANT | 0 | 0.51 |
| 21 | 1a0a_D_DT5_DC6 | NAN | NANT | 0 | 0.56 |
| 22 | 1a0a_D_DC6_DC7 | NAN | NANT | 0 | 0.62 |
| 23 | 1a0a_D_DC7_DC8 | NAN | NANT | 0 | 0.89 |
| 24 | 1a0a_D_DC8_DA9 | BBB | BB00 | 22 | 0.45 |
| 25 | 1a0a_D_DA9_DC10 | B12 | BB04 | 31 | 0.35 |
| 26 | 1a0a_D_DC10_DG11 | NAN | NANT | 0 | 0.72 |
| 27 | 1a0a_D_DG11_DT12 | NAN | NANT | 0 | 0.63 |
| 28 | 1a0a_D_DT12_DG13 | B12 | BB04 | 27 | 0.54 |
| 29 | 1a0a_D_DG13_DT14 | NAN | NANT | 0 | 0.52 |
| 30 | 1a0a_D_DT14_DG15 | BBB | BB00 | 46 | 0.41 |
| 31 | 1a0a_D_DG15_DA16 | NAN | NANT | 0 | 0.33 |
| 32 | 1a0a_D_DA16_DG17 | NAN | NANT | 0 | 0.56 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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