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Conformers: ABBIImiBZICOPNSYNN
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BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES

Results of the assignment of 240 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
00117ra-m10_A_G1_G2AAAAA00340.23 AA00
00217ra-m11_A_G1_G2AAAAA00450.23 AA00
00317ra-m12_A_G1_G2AAAAA00540.27 AA00
00417ra-m1_A_G1_G2AAAAA00580.21 AA00
00517ra-m2_A_G1_G2AAAAA00490.28 AA00
00617ra-m3_A_G1_G2AAAAA00400.33 AA00
00717ra-m4_A_G1_G2AAAAA00500.26 AA00
00817ra-m5_A_G1_G2AAAAA00500.21 AA00
00917ra-m6_A_G1_G2AAAAA00490.23 AA00
01017ra-m7_A_G1_G2AAAAA00360.26 AA00
01117ra-m8_A_G1_G2AAAAA00460.22 AA00
01217ra-m9_A_G1_G2AAAAA00370.29 AA00
01317ra-m10_A_G2_C3AAAAA08190.44 AA08
01417ra-m11_A_G2_C3AAAAA00240.32 AA00
01517ra-m12_A_G2_C3AAAAA04310.54 AA04
01617ra-m1_A_G2_C3AAAAA04410.53 AA04
01717ra-m2_A_G2_C3AAAAA00240.31 AA00
01817ra-m3_A_G2_C3AAAAA04300.60 AA04
01917ra-m4_A_G2_C3AAAAA00240.31 AA00
02017ra-m5_A_G2_C3AAAAA08210.43 AA08
02117ra-m6_A_G2_C3AAAAA04350.56 AA04
02217ra-m7_A_G2_C3AAAAA04280.57 AA04
02317ra-m8_A_G2_C3AAAAA04430.43 AA04
02417ra-m9_A_G2_C3AAAAA00240.28 AA00
02517ra-m10_A_C3_G4AAAAA00250.25 AA00
02617ra-m11_A_C3_G4AAAAA00250.24 AA00
02717ra-m12_A_C3_G4AAAAA00240.32 AA00
02817ra-m1_A_C3_G4AAAAA00240.31 AA00
02917ra-m2_A_C3_G4AAAAA00260.31 AA00
03017ra-m3_A_C3_G4AAAAA00250.30 AA00
03117ra-m4_A_C3_G4AAAAA00250.35 AA00
03217ra-m5_A_C3_G4AAAAA00250.35 AA00
03317ra-m6_A_C3_G4AAAAA00250.30 AA00
03417ra-m7_A_C3_G4AAAAA00240.32 AA00
03517ra-m8_A_C3_G4AAAAA00240.32 AA00
03617ra-m9_A_C3_G4AAAAA00250.34 AA00
03717ra-m10_A_G4_U5AAAAA04600.49 AA04
03817ra-m11_A_G4_U5AAAAA04590.49 AA04
03917ra-m12_A_G4_U5AAAAA04570.50 AA04
04017ra-m1_A_G4_U5AAAAA04580.49 AA04
04117ra-m2_A_G4_U5AAAAA04630.47 AA04
04217ra-m3_A_G4_U5AAAAA04610.49 AA04
04317ra-m4_A_G4_U5AAAAA04600.48 AA04
04417ra-m5_A_G4_U5AAAAA04680.43 AA04
04517ra-m6_A_G4_U5AAAAA04580.49 AA04
04617ra-m7_A_G4_U5AAAAA04590.50 AA04
04717ra-m8_A_G4_U5AAAAA04590.49 AA04
04817ra-m9_A_G4_U5AAAAA04630.46 AA04
04917ra-m10_A_U5_A6AAAAA00250.25 AA00
05017ra-m11_A_U5_A6AAAAA00310.26 AA00
05117ra-m12_A_U5_A6AAAAA00280.30 AA00
05217ra-m1_A_U5_A6AAAAA00220.33 AA00
05317ra-m2_A_U5_A6AAAAA00410.28 AA00
05417ra-m3_A_U5_A6AAAAA00300.32 AA00
05517ra-m4_A_U5_A6AAAAA00270.30 AA00
05617ra-m5_A_U5_A6NANNANT00.43 AA04
05717ra-m6_A_U5_A6AAAAA00150.36 AA00
05817ra-m7_A_U5_A6AAAAA00180.31 AA00
05917ra-m8_A_U5_A6AAAAA00260.24 AA00
06017ra-m9_A_U5_A6AAAAA00150.30 AA00
06117ra-m10_A_A6_A7AAwAA01110.42 AA01
06217ra-m11_A_A6_A7AAwAA01120.41 AA01
06317ra-m12_A_A6_A7AAwAA01100.40 AA01
06417ra-m1_A_A6_A7AAwAA01270.29 AA01
06517ra-m2_A_A6_A7AAwAA01370.28 AA01
06617ra-m3_A_A6_A7AAwAA01360.27 AA01
06717ra-m4_A_A6_A7AAwAA01340.30 AA01
06817ra-m5_A_A6_A7NANNANT00.52 BA10
06917ra-m6_A_A6_A7AAwAA01210.28 AA01
07017ra-m7_A_A6_A7AAAAA04510.32 AA04
07117ra-m8_A_A6_A7AAwAA01160.41 AA01
07217ra-m9_A_A6_A7NANNANT00.36 AA06
07317ra-m10_A_A7_G8AAAAA08390.20 AA08
07417ra-m11_A_A7_G8AAAAA04780.23 AA04
07517ra-m12_A_A7_G8AAAAA04770.18 AA04
07617ra-m1_A_A7_G8AAAAA00190.32 AA00
07717ra-m2_A_A7_G8AAAAA00240.39 AA00
07817ra-m3_A_A7_G8AAAAA00240.36 AA00
07917ra-m4_A_A7_G8AAAAA04740.29 AA04
08017ra-m5_A_A7_G8AAAAA00240.37 AA00
08117ra-m6_A_A7_G8AAAAA00240.34 AA00
08217ra-m7_A_A7_G8AAAAA04810.20 AA04
08317ra-m8_A_A7_G8AAAAA04730.28 AA04
08417ra-m9_A_A7_G8AAAAA04810.22 AA04
08517ra-m10_A_G8_G9AAAAA00260.24 AA00
08617ra-m11_A_G8_G9AAAAA04870.18 AA04
08717ra-m12_A_G8_G9AAAAA04870.19 AA04
08817ra-m1_A_G8_G9AAAAA00260.28 AA00
08917ra-m2_A_G8_G9AAAAA00260.30 AA00
09017ra-m3_A_G8_G9AAAAA00260.29 AA00
09117ra-m4_A_G8_G9AAAAA04860.18 AA04
09217ra-m5_A_G8_G9AAAAA00250.32 AA00
09317ra-m6_A_G8_G9AAAAA00250.32 AA00
09417ra-m7_A_G8_G9AAAAA04860.20 AA04
09517ra-m8_A_G8_G9AAAAA04910.16 AA04
09617ra-m9_A_G8_G9AAAAA04640.41 AA04
09717ra-m10_A_G9_A10AAAAA08390.26 AA08
09817ra-m11_A_G9_A10AAAAA08270.25 AA08
09917ra-m12_A_G9_A10AAAAA08460.28 AA08
10017ra-m1_A_G9_A10AAAAA08360.26 AA08
10117ra-m2_A_G9_A10AAAAA08380.26 AA08
10217ra-m3_A_G9_A10AAAAA08440.28 AA08
10317ra-m4_A_G9_A10AAAAA08440.29 AA08
10417ra-m5_A_G9_A10AAAAA08380.35 AA08
10517ra-m6_A_G9_A10AAAAA08430.30 AA08
10617ra-m7_A_G9_A10AAAAA08410.26 AA08
10717ra-m8_A_G9_A10AAAAA08380.25 AA08
10817ra-m9_A_G9_A10AAAAA08430.25 AA08
10917ra-m10_A_A10_U11NANNANT00.41 AB04
11017ra-m11_A_A10_U11NANNANT00.52 AB04
11117ra-m12_A_A10_U11A-BAB04670.32 AB04
11217ra-m1_A_A10_U11NANNANT00.43 AB04
11317ra-m2_A_A10_U11NANNANT00.41 AB04
11417ra-m3_A_A10_U11A-BAB04680.32 AB04
11517ra-m4_A_A10_U11A-BAB04700.31 AB04
11617ra-m5_A_A10_U11A-BAB04700.35 AB04
11717ra-m6_A_A10_U11A-BAB04700.31 AB04
11817ra-m7_A_A10_U11A-BAB04540.41 AB04
11917ra-m8_A_A10_U11NANNANT00.82 IC03
12017ra-m9_A_A10_U11A-BAB04530.40 AB04
12117ra-m10_A_U11_U12NANNANT01.14 OP22
12217ra-m11_A_U11_U12NANNANT00.62 OP24
12317ra-m12_A_U11_U12NANNANT00.73 OP23
12417ra-m1_A_U11_U12NANNANT01.13 OP22
12517ra-m2_A_U11_U12NANNANT01.14 OP22
12617ra-m3_A_U11_U12NANNANT00.73 OP23
12717ra-m4_A_U11_U12NANNANT00.74 OP23
12817ra-m5_A_U11_U12NANNANT00.51 OP24
12917ra-m6_A_U11_U12NANNANT00.74 OP23
13017ra-m7_A_U11_U12NANNANT01.14 OP22
13117ra-m8_A_U11_U12NANNANT01.19 OP22
13217ra-m9_A_U11_U12NANNANT01.13 OP22
13317ra-m10_A_U12_A13NANNANT01.67 BB11
13417ra-m11_A_U12_A13NANNANT01.47 BB11
13517ra-m12_A_U12_A13NANNANT01.80 OP23
13617ra-m1_A_U12_A13NANNANT01.66 BB11
13717ra-m2_A_U12_A13NANNANT01.85 OP23
13817ra-m3_A_U12_A13NANNANT01.79 OP23
13917ra-m4_A_U12_A13NANNANT01.79 OP23
14017ra-m5_A_U12_A13NANNANT01.67 BB13
14117ra-m6_A_U12_A13NANNANT01.55 BB11
14217ra-m7_A_U12_A13NANNANT01.85 OP23
14317ra-m8_A_U12_A13NANNANT01.80 OP23
14417ra-m9_A_U12_A13NANNANT01.68 BB11
14517ra-m10_A_A13_C14NANNANT00.86 OP15
14617ra-m11_A_A13_C14NANNANT00.87 OP15
14717ra-m12_A_A13_C14NANNANT00.82 OP15
14817ra-m1_A_A13_C14NANNANT00.88 OP15
14917ra-m2_A_A13_C14NANNANT00.80 OP15
15017ra-m3_A_A13_C14NANNANT00.82 OP15
15117ra-m4_A_A13_C14NANNANT00.84 OP15
15217ra-m5_A_A13_C14NANNANT00.64 BA08
15317ra-m6_A_A13_C14NANNANT00.87 OP15
15417ra-m7_A_A13_C14NANNANT00.81 OP15
15517ra-m8_A_A13_C14NANNANT00.88 OP15
15617ra-m9_A_A13_C14NANNANT00.85 BA17
15717ra-m10_A_C14_C15AAuAA12320.47 AA12
15817ra-m11_A_C14_C15AAAAA0870.46 AA08
15917ra-m12_A_C14_C15AAAAA08100.41 AA08
16017ra-m1_A_C14_C15AAuAA12420.50 AA12
16117ra-m2_A_C14_C15AAuAA12450.52 AA12
16217ra-m3_A_C14_C15AAuAA12450.51 AA12
16317ra-m4_A_C14_C15AAuAA12310.51 AA12
16417ra-m5_A_C14_C15AAuAA12310.54 AA12
16517ra-m6_A_C14_C15AAuAA12400.47 AA12
16617ra-m7_A_C14_C15AAAAA08120.41 AA08
16717ra-m8_A_C14_C15AAuAA12270.53 AA12
16817ra-m9_A_C14_C15NANNANT00.70 AA04
16917ra-m10_A_C15_U16AAAAA00200.42 AA00
17017ra-m11_A_C15_U16AAAAA00210.43 AA00
17117ra-m12_A_C15_U16AAAAA00180.45 AA00
17217ra-m1_A_C15_U16AAAAA00130.46 AA00
17317ra-m2_A_C15_U16AAAAA00160.45 AA00
17417ra-m3_A_C15_U16AAAAA00190.42 AA00
17517ra-m4_A_C15_U16AAAAA04770.39 AA04
17617ra-m5_A_C15_U16AAAAA00130.45 AA00
17717ra-m6_A_C15_U16AAAAA00140.43 AA00
17817ra-m7_A_C15_U16AAAAA00240.45 AA00
17917ra-m8_A_C15_U16AAAAA00220.37 AA00
18017ra-m9_A_C15_U16AAAAA04620.44 AA04
18117ra-m10_A_U16_A17AAAAA04800.37 AA04
18217ra-m11_A_U16_A17AAAAA00340.27 AA00
18317ra-m12_A_U16_A17AAAAA00540.25 AA00
18417ra-m1_A_U16_A17AAuAA12750.24 AA12
18517ra-m2_A_U16_A17AAuAA12670.31 AA12
18617ra-m3_A_U16_A17AAuAA12640.29 AA12
18717ra-m4_A_U16_A17AAuAA12660.29 AA12
18817ra-m5_A_U16_A17AAuAA12510.29 AA12
18917ra-m6_A_U16_A17AAuAA12590.30 AA12
19017ra-m7_A_U16_A17AAAAA04830.32 AA04
19117ra-m8_A_U16_A17AAAAA04790.38 AA04
19217ra-m9_A_U16_A17AAAAA04840.31 AA04
19317ra-m10_A_A17_U18AAAAA00420.39 AA00
19417ra-m11_A_A17_U18AAAAA00550.33 AA00
19517ra-m12_A_A17_U18AAAAA00510.35 AA00
19617ra-m1_A_A17_U18AAAAA00510.38 AA00
19717ra-m2_A_A17_U18AAAAA00470.36 AA00
19817ra-m3_A_A17_U18AAAAA00490.37 AA00
19917ra-m4_A_A17_U18AAAAA00470.40 AA00
20017ra-m5_A_A17_U18AAAAA00460.35 AA00
20117ra-m6_A_A17_U18AAAAA00490.38 AA00
20217ra-m7_A_A17_U18AAAAA00490.37 AA00
20317ra-m8_A_A17_U18AAAAA00380.40 AA00
20417ra-m9_A_A17_U18AAAAA00420.39 AA00
20517ra-m10_A_U18_G19AAAAA04650.41 AA04
20617ra-m11_A_U18_G19AAAAA04650.31 AA04
20717ra-m12_A_U18_G19AAAAA04420.54 AA04
20817ra-m1_A_U18_G19AAAAA04410.54 AA04
20917ra-m2_A_U18_G19AAAAA04320.52 AA04
21017ra-m3_A_U18_G19AAAAA04300.66 AA04
21117ra-m4_A_U18_G19AAAAA04670.32 AA04
21217ra-m5_A_U18_G19AAuAA12490.27 AA12
21317ra-m6_A_U18_G19AAAAA04390.54 AA04
21417ra-m7_A_U18_G19AAAAA04400.57 AA04
21517ra-m8_A_U18_G19AAAAA04700.34 AA04
21617ra-m9_A_U18_G19AAAAA04560.40 AA04
21717ra-m10_A_G19_C20AAAAA04920.23 AA04
21817ra-m11_A_G19_C20AAAAA00390.22 AA00
21917ra-m12_A_G19_C20AAAAA04800.31 AA04
22017ra-m1_A_G19_C20AAAAA00620.27 AA00
22117ra-m2_A_G19_C20AAAAA00460.28 AA00
22217ra-m3_A_G19_C20AAAAA00530.30 AA00
22317ra-m4_A_G19_C20AAAAA00320.25 AA00
22417ra-m5_A_G19_C20AAAAA00550.21 AA00
22517ra-m6_A_G19_C20AAAAA00500.31 AA00
22617ra-m7_A_G19_C20AAAAA04770.32 AA04
22717ra-m8_A_G19_C20AAAAA04900.18 AA04
22817ra-m9_A_G19_C20AAAAA00350.24 AA00
22917ra-m10_A_C20_C21AAAAA00260.32 AA00
23017ra-m11_A_C20_C21AAAAA00260.31 AA00
23117ra-m12_A_C20_C21AAAAA00250.35 AA00
23217ra-m1_A_C20_C21AAAAA00260.32 AA00
23317ra-m2_A_C20_C21AAAAA00260.33 AA00
23417ra-m3_A_C20_C21AAAAA00260.33 AA00
23517ra-m4_A_C20_C21AAAAA00240.37 AA00
23617ra-m5_A_C20_C21AAAAA00250.34 AA00
23717ra-m6_A_C20_C21AAAAA00260.32 AA00
23817ra-m7_A_C20_C21AAAAA00250.34 AA00
23917ra-m8_A_C20_C21AAAAA00260.33 AA00
24017ra-m9_A_C20_C21AAAAA00260.33 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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