Conformers:
ABBIImiBZICOPNSYNN
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THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 167d_A_DC1_DC2 | BBB | BB00 | 27 | 0.45 |
| 02 | 167d_A_DC2_DA3 | BB2 | BB07 | 21 | 0.29 |
| 03 | 167d_A_DA3_DT4 | BBB | BB00 | 18 | 0.23 |
| 04 | 167d_A_DT4_DT5 | B-A | BA01 | 37 | 0.26 |
| 05 | 167d_A_DT5_DA6 | NAN | NANT | 0 | 0.55 |
| 06 | 167d_A_DA6_DA7 | BBB | BB00 | 33 | 0.32 |
| 07 | 167d_A_DA7_DT8 | BBB | BB00 | 16 | 0.32 |
| 08 | 167d_A_DT8_DG9 | miB | BB15 | 29 | 0.51 |
| 09 | 167d_A_DG9_DG10 | BB2 | BB07 | 26 | 0.20 |
| 10 | 167d_B_DC11_DC12 | BBB | BB00 | 14 | 0.36 |
| 11 | 167d_B_DC12_DA13 | BBB | BB00 | 34 | 0.40 |
| 12 | 167d_B_DA13_DT14 | B-A | BA01 | 20 | 0.22 |
| 13 | 167d_B_DT14_DT15 | BBB | BB01 | 31 | 0.33 |
| 14 | 167d_B_DT15_DA16 | BBB | BB01 | 82 | 0.18 |
| 15 | 167d_B_DA16_DA17 | B-A | BA05 | 59 | 0.26 |
| 16 | 167d_B_DA17_DT18 | BBB | BB00 | 11 | 0.24 |
| 17 | 167d_B_DT18_DG19 | B12 | BB04 | 29 | 0.27 |
| 18 | 167d_B_DG19_DG20 | B12 | BB04 | 19 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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