Conformers:
ABBIImiBZICOPNSYNN
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CRYSTAL AND MOLECULAR STRUCTURE OF R(CGCGAAUUAGCG): AN RNA DUPLEX CONTAINING TWO G(ANTI).A(ANTI) BASE-PAIRS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 157d_A_C1_G2 | AAA | AA00 | 63 | 0.24 |
| 02 | 157d_A_G2_C3 | AAA | AA04 | 90 | 0.22 |
| 03 | 157d_A_C3_G4 | AAA | AA08 | 46 | 0.41 |
| 04 | 157d_A_G4_A5 | AAA | AA00 | 41 | 0.24 |
| 05 | 157d_A_A5_A6 | AAA | AA08 | 77 | 0.21 |
| 06 | 157d_A_A6_U7 | AAA | AA08 | 71 | 0.20 |
| 07 | 157d_A_U7_U8 | AAA | AA03 | 91 | 0.23 |
| 08 | 157d_A_U8_A9 | AAA | AA08 | 36 | 0.26 |
| 09 | 157d_A_A9_G10 | AAA | AA00 | 72 | 0.23 |
| 10 | 157d_A_G10_C11 | AAA | AA08 | 84 | 0.14 |
| 11 | 157d_A_C11_G12 | AAA | AA00 | 59 | 0.15 |
| 12 | 157d_B_C13_G14 | AAA | AA08 | 55 | 0.23 |
| 13 | 157d_B_G14_C15 | AAA | AA03 | 43 | 0.30 |
| 14 | 157d_B_C15_G16 | AAA | AA04 | 74 | 0.35 |
| 15 | 157d_B_G16_A17 | AAA | AA00 | 81 | 0.22 |
| 16 | 157d_B_A17_A18 | AAA | AA03 | 88 | 0.21 |
| 17 | 157d_B_A18_U19 | AAA | AA04 | 71 | 0.23 |
| 18 | 157d_B_U19_U20 | AAA | AA00 | 10 | 0.19 |
| 19 | 157d_B_U20_A21 | AAA | AA08 | 37 | 0.25 |
| 20 | 157d_B_A21_G22 | AAA | AA00 | 45 | 0.22 |
| 21 | 157d_B_G22_C23 | AAA | AA04 | 95 | 0.09 |
| 22 | 157d_B_C23_G24 | AAA | AA08 | 78 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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