Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 2 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 146d-m1_A_DT1_DC2 | AAA | AA00 | 69 | 0.26 |
| 02 | 146d-m2_A_DT1_DC2 | NAN | NANT | 0 | 0.76 |
| 03 | 146d-m1_A_DC2_DG3 | A-B | AB05 | 73 | 0.30 |
| 04 | 146d-m2_A_DC2_DG3 | A-B | AB01 | 21 | 0.51 |
| 05 | 146d-m1_A_DG3_DC4 | B-A | BA01 | 20 | 0.23 |
| 06 | 146d-m2_A_DG3_DC4 | NAN | NANT | 0 | 0.30 |
| 07 | 146d-m1_A_DC4_DG5 | A-B | AB01 | 66 | 0.25 |
| 08 | 146d-m2_A_DC4_DG5 | A-B | AB01 | 20 | 0.25 |
| 09 | 146d-m1_A_DG5_DA6 | BBB | BB00 | 69 | 0.34 |
| 10 | 146d-m2_A_DG5_DA6 | NAN | NANT | 0 | 0.64 |
| 11 | 146d-m1_B_DT7_DC8 | AAA | AA00 | 69 | 0.26 |
| 12 | 146d-m2_B_DT7_DC8 | NAN | NANT | 0 | 0.76 |
| 13 | 146d-m1_B_DC8_DG9 | A-B | AB05 | 73 | 0.30 |
| 14 | 146d-m2_B_DC8_DG9 | A-B | AB01 | 21 | 0.51 |
| 15 | 146d-m1_B_DG9_DC10 | B-A | BA01 | 20 | 0.23 |
| 16 | 146d-m2_B_DG9_DC10 | NAN | NANT | 0 | 0.30 |
| 17 | 146d-m1_B_DC10_DG11 | A-B | AB01 | 67 | 0.25 |
| 18 | 146d-m2_B_DC10_DG11 | A-B | AB01 | 19 | 0.25 |
| 19 | 146d-m1_B_DG11_DA12 | BBB | BB00 | 69 | 0.34 |
| 20 | 146d-m2_B_DG11_DA12 | NAN | NANT | 0 | 0.64 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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