Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 126d_A_DC1_DA2 | BBw | BB02 | 43 | 0.43 |
| 02 | 126d_A_DA2_DT3 | BBB | BB00 | 64 | 0.33 |
| 03 | 126d_A_DT3_DG4 | BB2 | BB07 | 64 | 0.33 |
| 04 | 126d_A_DG4_DG5 | miB | BB15 | 22 | 0.36 |
| 05 | 126d_A_DG5_DC6 | B-A | BA05 | 53 | 0.37 |
| 06 | 126d_A_DC6_DC7 | A-B | AB01 | 55 | 0.40 |
| 07 | 126d_A_DC7_DA8 | BB2 | BB07 | 60 | 0.34 |
| 08 | 126d_A_DA8_DT9 | B-A | BA05 | 26 | 0.33 |
| 09 | 126d_A_DT9_DG10 | A-B | AB01 | 68 | 0.29 |
| 10 | 126d_B_DC11_DA12 | NAN | NANT | 0 | 0.57 |
| 11 | 126d_B_DA12_DT13 | NAN | NANT | 0 | 0.39 |
| 12 | 126d_B_DT13_DG14 | BB2 | BB07 | 20 | 0.35 |
| 13 | 126d_B_DG14_DG15 | NAN | NANT | 0 | 0.46 |
| 14 | 126d_B_DG15_DC16 | B-A | BA05 | 77 | 0.30 |
| 15 | 126d_B_DC16_DC17 | A-B | AB03 | 79 | 0.29 |
| 16 | 126d_B_DC17_DA18 | BB2 | BB07 | 54 | 0.32 |
| 17 | 126d_B_DA18_DT19 | B-A | BA05 | 51 | 0.35 |
| 18 | 126d_B_DT19_DG20 | BBB | BB01 | 11 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|