Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 10mh_B_DC402_DC403 | AAA | AA04 | 27 | 0.58 |
| 02 | 10mh_B_DC403_DA404 | AAA | AA02 | 10 | 0.54 |
| 03 | 10mh_B_DA404_DT405 | BBB | BB00 | 14 | 0.30 |
| 04 | 10mh_B_DT405_DG406 | BB2 | BB07 | 16 | 0.39 |
| 05 | 10mh_B_DG406_5CM407 | NAN | NANT | 0 | 0.81 |
| 06 | 10mh_B_5CM407_DG408 | NAN | NANT | 0 | 0.87 |
| 07 | 10mh_B_DG408_DC409 | BB2 | BB07 | 21 | 0.50 |
| 08 | 10mh_B_DC409_DT410 | BBB | BB00 | 42 | 0.36 |
| 09 | 10mh_B_DT410_DG411 | BBB | BB00 | 70 | 0.21 |
| 10 | 10mh_B_DG411_DA412 | BBB | BB00 | 34 | 0.31 |
| 11 | 10mh_B_DA412_DC413 | miB | BB13 | 59 | 0.30 |
| 12 | 10mh_C_DG422_DT423 | A-B | AB05 | 42 | 0.39 |
| 13 | 10mh_C_DT423_DC424 | BBB | BB00 | 31 | 0.31 |
| 14 | 10mh_C_DC424_DA425 | BBB | BB00 | 53 | 0.34 |
| 15 | 10mh_C_DA425_DG426 | B12 | BB04 | 54 | 0.30 |
| 16 | 10mh_C_DG426_5NC427 | NAN | NANT | 0 | 1.02 |
| 17 | 10mh_C_5NC427_DG428 | NAN | NANT | 0 | 1.07 |
| 18 | 10mh_C_DG428_DC429 | BBB | BB00 | 18 | 0.43 |
| 19 | 10mh_C_DC429_DA430 | BBB | BB00 | 47 | 0.30 |
| 20 | 10mh_C_DA430_DT431 | B12 | BB04 | 75 | 0.29 |
| 21 | 10mh_C_DT431_DG432 | B-A | BA08 | 81 | 0.30 |
| 22 | 10mh_C_DG432_DG433 | A-B | AB05 | 67 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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