Conformers:
ABBIImiBZICOPNSYNN
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SOLUTION STRUCTURES OF THE I-MOTIF TETRAMERS OF D(TCC), D(5MCCT) AND D(T5MCC). NOVEL NOE CONNECTIONS BETWEEN AMINO PROTONS AND SUGAR PROTONS
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 64 detected steps in 8 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 105d-m1_A_DT1_DC2 | NAN | NANT | 0 | 0.97 |
| 02 | 105d-m2_A_DT1_DC2 | NAN | NANT | 0 | 0.70 |
| 03 | 105d-m3_A_DT1_DC2 | NAN | NANT | 0 | 0.86 |
| 04 | 105d-m4_A_DT1_DC2 | NAN | NANT | 0 | 0.71 |
| 05 | 105d-m5_A_DT1_DC2 | NAN | NANT | 0 | 0.68 |
| 06 | 105d-m6_A_DT1_DC2 | NAN | NANT | 0 | 0.53 |
| 07 | 105d-m7_A_DT1_DC2 | NAN | NANT | 0 | 0.70 |
| 08 | 105d-m8_A_DT1_DC2 | NAN | NANT | 0 | 0.85 |
| 09 | 105d-m1_A_DC2_DC3 | NAN | NANT | 0 | 0.44 |
| 10 | 105d-m2_A_DC2_DC3 | NAN | NANT | 0 | 0.42 |
| 11 | 105d-m3_A_DC2_DC3 | NAN | NANT | 0 | 0.39 |
| 12 | 105d-m4_A_DC2_DC3 | NAN | NANT | 0 | 0.51 |
| 13 | 105d-m5_A_DC2_DC3 | NAN | NANT | 0 | 0.67 |
| 14 | 105d-m6_A_DC2_DC3 | NAN | NANT | 0 | 0.59 |
| 15 | 105d-m7_A_DC2_DC3 | NAN | NANT | 0 | 0.47 |
| 16 | 105d-m8_A_DC2_DC3 | NAN | NANT | 0 | 0.47 |
| 17 | 105d-m1_B_DT4_DC5 | NAN | NANT | 0 | 0.73 |
| 18 | 105d-m2_B_DT4_DC5 | NAN | NANT | 0 | 0.71 |
| 19 | 105d-m3_B_DT4_DC5 | NAN | NANT | 0 | 0.76 |
| 20 | 105d-m4_B_DT4_DC5 | NAN | NANT | 0 | 0.67 |
| 21 | 105d-m5_B_DT4_DC5 | NAN | NANT | 0 | 0.56 |
| 22 | 105d-m6_B_DT4_DC5 | NAN | NANT | 0 | 0.58 |
| 23 | 105d-m7_B_DT4_DC5 | NAN | NANT | 0 | 0.58 |
| 24 | 105d-m8_B_DT4_DC5 | NAN | NANT | 0 | 0.77 |
| 25 | 105d-m1_B_DC5_DC6 | NAN | NANT | 0 | 0.51 |
| 26 | 105d-m2_B_DC5_DC6 | NAN | NANT | 0 | 0.91 |
| 27 | 105d-m3_B_DC5_DC6 | NAN | NANT | 0 | 0.41 |
| 28 | 105d-m4_B_DC5_DC6 | NAN | NANT | 0 | 0.96 |
| 29 | 105d-m5_B_DC5_DC6 | NAN | NANT | 0 | 0.57 |
| 30 | 105d-m6_B_DC5_DC6 | NAN | NANT | 0 | 0.41 |
| 31 | 105d-m7_B_DC5_DC6 | NAN | NANT | 0 | 0.40 |
| 32 | 105d-m8_B_DC5_DC6 | NAN | NANT | 0 | 0.48 |
| 33 | 105d-m1_C_DT7_DC8 | NAN | NANT | 0 | 0.62 |
| 34 | 105d-m2_C_DT7_DC8 | NAN | NANT | 0 | 0.57 |
| 35 | 105d-m3_C_DT7_DC8 | NAN | NANT | 0 | 0.69 |
| 36 | 105d-m4_C_DT7_DC8 | NAN | NANT | 0 | 0.68 |
| 37 | 105d-m5_C_DT7_DC8 | NAN | NANT | 0 | 0.63 |
| 38 | 105d-m6_C_DT7_DC8 | NAN | NANT | 0 | 0.62 |
| 39 | 105d-m7_C_DT7_DC8 | NAN | NANT | 0 | 0.73 |
| 40 | 105d-m8_C_DT7_DC8 | NAN | NANT | 0 | 0.78 |
| 41 | 105d-m1_C_DC8_DC9 | NAN | NANT | 0 | 0.75 |
| 42 | 105d-m2_C_DC8_DC9 | NAN | NANT | 0 | 0.74 |
| 43 | 105d-m3_C_DC8_DC9 | NAN | NANT | 0 | 0.81 |
| 44 | 105d-m4_C_DC8_DC9 | NAN | NANT | 0 | 0.82 |
| 45 | 105d-m5_C_DC8_DC9 | NAN | NANT | 0 | 0.48 |
| 46 | 105d-m6_C_DC8_DC9 | NAN | NANT | 0 | 0.43 |
| 47 | 105d-m7_C_DC8_DC9 | NAN | NANT | 0 | 0.44 |
| 48 | 105d-m8_C_DC8_DC9 | NAN | NANT | 0 | 0.47 |
| 49 | 105d-m1_D_DT10_DC11 | NAN | NANT | 0 | 0.73 |
| 50 | 105d-m2_D_DT10_DC11 | NAN | NANT | 0 | 0.82 |
| 51 | 105d-m3_D_DT10_DC11 | NAN | NANT | 0 | 0.76 |
| 52 | 105d-m4_D_DT10_DC11 | NAN | NANT | 0 | 0.76 |
| 53 | 105d-m5_D_DT10_DC11 | NAN | NANT | 0 | 0.67 |
| 54 | 105d-m6_D_DT10_DC11 | NAN | NANT | 0 | 0.61 |
| 55 | 105d-m7_D_DT10_DC11 | NAN | NANT | 0 | 0.66 |
| 56 | 105d-m8_D_DT10_DC11 | NAN | NANT | 0 | 0.81 |
| 57 | 105d-m1_D_DC11_DC12 | NAN | NANT | 0 | 0.41 |
| 58 | 105d-m2_D_DC11_DC12 | NAN | NANT | 0 | 0.46 |
| 59 | 105d-m3_D_DC11_DC12 | NAN | NANT | 0 | 0.47 |
| 60 | 105d-m4_D_DC11_DC12 | NAN | NANT | 0 | 0.47 |
| 61 | 105d-m5_D_DC11_DC12 | NAN | NANT | 0 | 0.59 |
| 62 | 105d-m6_D_DC11_DC12 | NAN | NANT | 0 | 1.96 |
| 63 | 105d-m7_D_DC11_DC12 | NAN | NANT | 0 | 0.51 |
| 64 | 105d-m8_D_DC11_DC12 | NAN | NANT | 0 | 0.86 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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