Conformers:
ABBIImiBZICOPNSYNN
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DNA DUPLEXES FLANKED BY HYBRID DUPLEXES: THE SOLUTION STRUCTURE OF CHIMERIC JUNCTIONS IN
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 104d_A_C1_G2 | AAA | AA00 | 22 | 0.32 |
| 02 | 104d_A_G2_C3 | AAA | AA04 | 68 | 0.30 |
| 03 | 104d_A_C3_G4 | AAA | AA00 | 59 | 0.29 |
| 04 | 104d_A_G4_DT5 | AAA | AA04 | 73 | 0.21 |
| 05 | 104d_A_DT5_DA6 | NAN | NANT | 0 | 0.44 |
| 06 | 104d_A_DA6_DT7 | NAN | NANT | 0 | 0.39 |
| 07 | 104d_A_DT7_DA8 | BBB | BB00 | 16 | 0.41 |
| 08 | 104d_A_DA8_DC9 | B-A | BA05 | 68 | 0.26 |
| 09 | 104d_A_DC9_DG10 | BBB | BB01 | 16 | 0.34 |
| 10 | 104d_A_DG10_DC11 | BBB | BB00 | 30 | 0.39 |
| 11 | 104d_A_DC11_DG12 | BBB | BB01 | 27 | 0.27 |
| 12 | 104d_B_C13_G14 | AAA | AA00 | 24 | 0.32 |
| 13 | 104d_B_G14_C15 | AAA | AA04 | 68 | 0.30 |
| 14 | 104d_B_C15_G16 | AAA | AA00 | 58 | 0.30 |
| 15 | 104d_B_G16_DT17 | AAA | AA04 | 73 | 0.21 |
| 16 | 104d_B_DT17_DA18 | NAN | NANT | 0 | 0.45 |
| 17 | 104d_B_DA18_DT19 | NAN | NANT | 0 | 0.39 |
| 18 | 104d_B_DT19_DA20 | BBB | BB00 | 16 | 0.40 |
| 19 | 104d_B_DA20_DC21 | B-A | BA05 | 68 | 0.26 |
| 20 | 104d_B_DC21_DG22 | BBB | BB01 | 22 | 0.33 |
| 21 | 104d_B_DG22_DC23 | BBB | BB00 | 30 | 0.40 |
| 22 | 104d_B_DC23_DG24 | BBB | BB01 | 29 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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