Conformers:
ABBIImiBZICOPNSYNN
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CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 100d_A_C1_DC2 | AAA | AA00 | 77 | 0.19 |
| 02 | 100d_A_DC2_DG3 | AAA | AA00 | 27 | 0.26 |
| 03 | 100d_A_DG3_DG4 | AAA | AA00 | 13 | 0.40 |
| 04 | 100d_A_DG4_DC5 | AAw | AA06 | 23 | 0.35 |
| 05 | 100d_A_DC5_DG6 | AAA | AA04 | 70 | 0.32 |
| 06 | 100d_A_DG6_DC7 | AAA | AA08 | 84 | 0.12 |
| 07 | 100d_A_DC7_DC8 | AAA | AA00 | 57 | 0.23 |
| 08 | 100d_A_DC8_DG9 | AAA | AA00 | 48 | 0.25 |
| 09 | 100d_A_DG9_G10 | AAA | AA00 | 22 | 0.32 |
| 10 | 100d_B_C11_DC12 | AAA | AA00 | 85 | 0.25 |
| 11 | 100d_B_DC12_DG13 | AAw | AA01 | 55 | 0.19 |
| 12 | 100d_B_DG13_DG14 | AAA | AA00 | 73 | 0.23 |
| 13 | 100d_B_DG14_DC15 | AAA | AA00 | 89 | 0.18 |
| 14 | 100d_B_DC15_DG16 | AAA | AA00 | 30 | 0.38 |
| 15 | 100d_B_DG16_DC17 | AAA | AA00 | 38 | 0.30 |
| 16 | 100d_B_DC17_DC18 | AAA | AA08 | 87 | 0.16 |
| 17 | 100d_B_DC18_DG19 | AAA | AA00 | 65 | 0.20 |
| 18 | 100d_B_DG19_G20 | AAA | AA00 | 63 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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